研究業績一覧

 

論文(査読有り)

49. Atsumi, K., H. Y. SONG, H. Senou, K. Inoue, and K. Mabuchi. Morphological features of an endangered Japanese strain of Cyprinus carpio: reconstruction based on seven SNP markers. Journal of Fish Biology, (in press).

48. Sato, T. P., M. Miya, K. Mabuchi, and M. Nishida. 2016. Structure and variation of the mitochondrial genome of fishes. BMC Genomics, 17: 719.

47. Mabuchi, K. 2016. Complete mitochondrial genome of the parrotfish Calotomus japonicus (Osteichthyes: Scaridae) with implications based on the phylogenetic position. Mitochondrial DNA Part B: Resources, (in press).

46. Mabuchi, K. 2016. A method for PCR-based identification of fish eggs attached to vegetation in Lake Biwa, Japan. Conservation Genetics Resources, 8: 215-217.

45. Mabuchi, K. 2016. Complete mitochondrial genomes of five introduced strains of common carp Cyprinus carpio in Japan with 29 diagnostic SNPs distinguishable by restriction enzyme analysis. Mitochondrial DNA Part B: Resources, (in press).

44. 馬渕浩司・林 公義・T. H. Fraser . 2015. テンジクダイ科の新分類体系にもとづく亜科・族・属の標準和名の提唱. 魚類学雑誌, 62: 29-49.

43. Yorifuji, M., H. Takeshima, K. Mabuchi, T. Watanabe, and M. Nishida. 2015. Comparison of Symbiodinium dinoflagellate flora in sea slug populations of the Pteraeolidia ianthina complex. Marine Ecology Progress Series, 521: 91-104.

42. Mabuchi, K., T. H.Fraser, H. Song, Y. Azuma, and M. Nishida. 2014. Revision of the systematics of the cardinalfishes (Percomorpha: Apogonidae) based on molecular analyses and comparative reevaluation of morphological characters. Zootaxa, 3846 (2): 151-203.

41. Song H.Y., K. Mabuchi, T. P. Sato, J. A. Moore, Y. Yamanoue, M. Miya, and M. Nishida. 2014. Mitogenomic circumscription of a novel percomorph fish clade mainly comprising “Syngnathoidei” (Teleostei). Gene, 542: 146-155.

40. Mabuchi, K., and K. Kuriiwa. 2014. Molecular phylogenetic affinities of Scarus obishime Randall & Earle, 1993, endemic to the Pacific Ocean archipelago of Ogasawara (Japan). Pacific Science, 68 (3): 321-331.

39. Mabuchi, K. and H. Song. 2014. The complete mitochondrial genome of the Japanese ornamental koi carp (Cyprinus carpio) and its implication for the history of koi. Mitochondrial DNA, 25: 35-36.

38. Song, H. and K. Mabuchi. 2014. Complete mitochondrial genome sequence of the thorny seahorse Hippocampus histrix (Gasterosteiformes: Syngnathidae). Mitochondrial DNA, 25: 7-8.

37. Iwasaki, W., T. Fukunaga, R. Isagozawa, K. Yamada, Y. Maeda, T. P. Satoh, T. Sado, K. Mabuchi, H. Takeshima, M. Miya, and M. Nishida. 2013. MitoFish and MitoAnnotator: A mitochondrial genome database of fish with an accurate and automatic annotation pipeline. Molecular Biology and Evolution, 30: 2531-2540.

36. Miya, M., M. Friedman, T. P. Satoh, H. Takeshima, T. Sado, W. Iwasaki, Y. Yamanoue, M. Nakatani, K. Mabuchi, J. G. Inoue, J. Y. Poulsen, T. Fukunaga, Y. Sato, and M. Nishida. 2013. Evolutionary origin of the Scombridae (tunas and mackerels): Members of a Paleogene adaptive radiation with 14 other pelagic fish families. PLOS ONE, 8(9): e73535.

35. Yorifuji, M., H. Takeshima, K. Mabuchi, and M. Nishida. 2012. Hidden diversity in a reef-dwelling sea slug, Pteraeolidia ianthina (Nudibranchia, Aeolidida), in the northwestern Pacific. Zoological Science, 29: 359-367.

34. Song, H., T. P. Satoh, and K. Mabuchi. 2012. Complete mitochondrial genome sequence of the dragonet Callionymus curvicornis (Perciformes: Callionymoidei: Callionymidae). Mitochondrial DNA, 23: 290-292.

33. Mabuchi, K., H. Song, H. Takeshima, and M. Nishida. 2012. A set of SNPs near or within STR regions useful for discriminating native Lake Biwa and introduced "Eurasian" strains of common carp. Conservation Genetics Resources, 4: 649-652.

32. Nakatani, M., M. Miya, K. Mabuchi, K. Saitoh, and M. Nishida. 2011. Evolutionary history of Otophysi (Teleostei), a major clade of the modern freshwater fishes: Pangaean origin and Mesozoic radiation. BMC Evolutionary Biology, 11: 177.

31. Yamanoue, Y., M. Miya, H. Doi, K. Mabuchi, H. Sakai, and M. Nishida. 2011. Multiple invasions into freshwater by pufferfishes (Teleostei: Tetraodontidae): a mitogenomic perspective. PLoS ONE, 6: e17410.

30. Matsuzaki, S. S., K. Mabuchi, N. Takamura, B.J. Hicks, M. Nishida, and I. Washitani. 2010. Stable isotope and molecular analyses indicate that hybridization with non-native domesticated common carp influence habitat use of native carp. Oikos, 119: 964-971.

29. 山野上祐介・馬渕浩司・澤井悦郎・坂井陽一・橋本博明・西田 . 2010. マルチプレックス PCR 法を用いた日本産マンボウ属 2 種のミトコンドリア DNA の簡易識別法. 魚類学雑誌, 57: 27-34.

28. 馬渕浩司・瀬能 宏・武島弘彦・中井克樹・西田 . 2010. 琵琶湖におけるコイの日本在来 mtDNA ハプロタイプの分布. 魚類学雑誌, 57: 1-12. 


27. Matsuzaki, S. S., K. Mabuchi, N. Takamura, M. Nishida, and I. Washitani. 2009. Behavioral and morphological differences between feral and domesticated strains of common carp. Journal of Fish Biology, 75: 1206-1220.

26. Setiamarga, D. H. E., M. Miya, Y. Yamanoue, Y. Azuma, J. G. Inoue, N. B. Ishiguro, K. Mabuchi, and M. Nishida. 2009. Divergence time of the two regional medaka populations in Japan as a new time scale for comparative genomics of vertebrates. Biology Letters, 5: 812-816. 


25. Yagishita, N., M. Miya, Y. Yamanoue, S. M. Shirai, K. Nakayama, N. Suzuki, T. P. Satoh, K. Mabuchi, M. Nishida, and T. Nakabo. 2009. Mitogenomic evaluation of the unique facial nerve pattern as a phylogenetic marker within the percifom fishes (Teleostei: Percomorpha). Molecular Phylogenetics and Evolution, 53: 258-266. 


24. Yamanoue, Y., M. Miya, K. Matsuura, S. Miyazawa, N. Tsukamoto, H. Doi, H. Takahashi, K. Mabuchi, M. Nishida, and H. Sakai. 2009. Explosive speciation of Takifugu: Another use of fugu as a model system for evolutionary biology. Molecular Biology and Evolution, 26: 623-629.

23. Kawahara, R., M. Miya, K. Mabuchi, T. J. Near, and M. Nishida. 2009. Stickleback phylogenies resolved: Evidence from mitochondrial genomes and 11 nuclear genes. Molecular Phylogenetics and Evolution, 50: 401-404. 


22. Setiamarga, Davin, H. E., M. Miya, Y. Yamanoue, K. Mabuchi, T. P. Sato, J. G. Inoue, and M. Nishida. 2008. Interrelationships of Atherinomorpha (medakas, flyingfishes, killifishes, silversides, and their relatives): The first evidence based on whole mitogenome sequences. Molecular Phylogenetics and Evolution, 49: 598-605.

21. Azuma, Y., Y. Kumazawa, M. Miya, K. Mabuchi, and M. Nishida. 2008. Mitogenomic evaluation of the historical biogeography of cichlids toward reliable dating of teleostean divergences. BMC Evolutionary Biology, 8: 215.

20. Mabuchi, K., H. Senou, and M. Nishida. 2008. Mitochondrial DNA analysis reveals cryptic large-scale invasion of non-native genotypes of common carp Cyprinus caprio in Japan. Molecular Ecology, 17: 796-809.

19. Kawahara, R., M. Miya, K. Mabuchi, S. Lavoue, J. G. Inoue, T. P. Satoh, A. Kawaguchi, and M. Nishida. 2008. Interrelationships of the 11 gasterosteiform families (sticklebacks, pipefishes, and their relatives): a new pespective based on whole mitogenome sequences from 75 higher teleosts. Molecular Phylogenetics and Evolution, 46: 224-236.

18. Yamanoue, Y., M. Miya, K. Matsuura, N. Yagishita, K. Mabuchi, H. Sakai, M. Katoh, and M. Nishida. 2007. Phylogenetic position of tetraodontiform fishes within the higher teleosts: Bayesian inferences based on 44 whole mitochondrial genome sequences. Molecular Phylogenetics and Evolution, 45: 89-101. 


17. Mabuchi, K., M. Miya, Y. Azuma, and M. Nishida. 2007. Independent evolution of the specialized pharyngeal jaw apparatus in cichlid and labrid fishes. BMC Evolutionary Biology, 7: 10.

16. Mabuchi, K., M. Miya, H. Senou, T. Suzuki and M. Nishida. 2006. Complete mitochondrial DNA sequence of the Lake Biwa wild strain of common carp (Cyprinus carpio L.): further evidence for an ancient origin. Aquaculture, 257: 68-77.

15. Mabuchi, K., N. Okuda and M. Nishida. 2006. Molecular phylogeny and stripe pattern evolution in the cardinalfish genus Apogon. Molecular Phylogenetics and Evolution, 38: 90-99.

14. 馬渕浩司・西田 . 2006. PCR 法を用いた琵琶湖産野生型コイのミトコンドリア DNA の簡易識別法. 水産育種, 35: 19-23.

13. Mabuchi, K., H. Senou, T. Suzuki, and M. Nishida. 2005. Discovery of an ancient lineage of Cyprinus carpio from Lake Biwa, central Japan, based on mtDNA sequence data, with reference to possible multiple origins of koi. Journal of Fish Biology, 66: 1516-1528. 


12. Mabuchi, K., M. Miya, T. P. Sato, M. W. Westneat, and M. Nishida. 2004. Gene rearrangements and evolution of tRNA pseudogenes in the mitochondrial genome of the parrotfishes (Teleostei: Perciformes: Scaridae). Journal of Molecular Evolution, 59(3): 287-297. 


11. Mabuchi, K., T. Nakabo, and M. Nishida. 2004. Molecular phylogeny of the antitropical genus Pseudolabrus (Perciformes: Labridae): evidence for a Southern Hemisphere origin. Molecular Phylogenetics and Evolution, 32(1): 375-382. 


10. Mabuchi, K., N. Okuda, and M. Nishida. 2004. Genetic differentiation between two color-morphs of Apogon taeniophorus from Southern Japan. Ichthyological Research, 51(2): 180-183. 


9. 馬渕浩司. 2003. ササノハベラ属2種の南日本沿岸における地理的分布パターン. 魚類学雑誌, 50(2): 103-113.

8. Mabuchi, K., N. Okuda, T. Kokita, and M. Nishida. 2003. Genetic comparison of two color-morphs of Apogon properuptus from Southern Japan. Ichthyological Research, 50(3): 293-296. 


7. Miya, M., H. Takeshima, H. Endo, N. B. Ishiguro, J. G. Inoue, T. Mukai, T. P. Sato, M. Yamaguchi, A. Kawaguchi, K. Mabuchi, S. M. Shirai, and M. Nishida. 2003. Major patterns of higher teleostean phylogenies: A new perspective based on 100 complete mitochondrial DNA sequences. Molecular Phylogenetics and Evolution, 26(1): 121-138.

6. Mabuchi, K., H. Ikeda, T. Nakabo, and M. Nishida. 2002. Genetic comparison of two Choerodon (Osteichthyes: Labridae) color-types from the southern coasts of Japan. Species Diversity, 7(4): 387-392.

5. 馬渕浩司・新井良一・西田 . 2002. 南日本産ササノハベラ属2種の核型および核DNA. 魚類学雑誌, 49(2): 87-95.

4. Mabuchi, K., T. Kobayashi, and T. Nakabo. 2000. Genetic differences between two Pseudolabrus species (Osteichthyes: Labridae) from the southern coasts of Japan. Species Diversity, 5(2): 163-172. 


3. 馬渕浩司・松本一範・中坊徹次. 1999. 愛媛県宇和海から採集されたササノハベラ属種間雑種. 魚類学雑誌, 46(2): 115-119.

2. Matsumoto, K., K. Mabuchi, M. Kohda, and T. Nakabo. 1997. Spawning behavior and reproductive isolation of two Pseudolabrus. Ichthyological Research, 44(4): 379-384.

1. Mabuchi, K. and T. Nakabo. 1997. Revision of the genus Pseudolabrus (Labridae) from East Asian waters. Ichthyological Research, 44(4): 321-334.

 

論文(査読無し)

2. 馬渕浩司. 2014. 御代ヶ池のコイ:DNA解析からの知見. Mikurensisみくらしまの科学, 3: 17-26.

1. 坂井陽一・越智雄一郎・坪井美由紀・門田 立・清水則雄・小路 淳・松本一範・馬渕浩司・国吉久人・大塚 攻・橋本博明. 2010. 瀬戸内海安芸灘の浅海魚類相 ホシササノハベラとホシノハゼの分布に注目して. 広島大学大学院生物圏科学研究科紀要, 497-20.

 

著書

5. 馬渕浩司. 2012. 黒潮沿岸と内湾の「ペア種」とその歴史. 松浦啓一 (). pp. 145-163. 黒潮の魚たち. 東海大学出版会, 秦野.

4. 馬渕浩司. 2010. 外来魚の保全遺伝学的解析・評価法. 鷲谷いづみ・宮下 直・西廣 淳・角谷 (). pp. 83-100. 保全生態学の技法. 東京大学出版会, 東京.


3. 馬渕浩司. 2009. 日本の磯魚群集の形成史:分子系統が語る浅海の交流史. 西田 (). pp. 359-375. 海洋生命系のダイナミクスシリーズ 第1巻 海洋の生命史-生命は海でどう進化したか. 東海大学出版会, 秦野.

2. 馬渕浩司. 2001. テンジクダイ科, ベラ科, ブダイ科. 中坊徹次・町田吉彦・山岡耕作・西田清徳 (). pp. 185-189, 237-241. 以布利 黒潮の魚. 大阪海遊館, 大阪.


1. 馬渕浩司・松本一範. 1998. 2種のササノハベラ. 中坊徹次・望月賢二 (). p. 146.日本動物大百科 第6巻 魚類. 平凡社, 東京.

 

翻訳

2. Avise, J. C. 西田 睦・武藤文人 監訳 (馬渕浩司・向井貴彦・野原正広 ). 2008. 生物系統地理学 種の進化を探る. 東京大学出版会, 東京, pp.303.

1. Nakabo, T. ed., translated by Mabuchi, K. 2002. Acanthuridae, Anomalopidae, Anoplogastridae, Apogonidae, Berycidae, Chaetodontidae, Creediidae, Diretmidae, Ephippididae, Holocentridae, Labridae, Luvaridae, Monocentridae, Pinguipedidae, Pomacanthidae, Scaridae, Scatophagidae, Siganidae, Trachichthyidae, Trichonotidae, Zanclidae. Pages 485-504, 750-779, 884-907, 969-1026, 1059-1064, 1069-1070, 1311-1330 in T. Nakabo ed. Fishes of Japan with pictoral keys to the species, English edition. Tokai University Press, Tokyo.

 

学会誌報文

1. 馬渕浩司・武島弘彦・中井克樹・瀬能 宏・鈴木寿之・西田 . 2004. 琵琶湖における野生型コイの大量斃死. 魚類学雑誌, 51 (2): 190-192.


 

商業誌

3. 馬渕浩司. 2005. 自然遺産としての日本の野生型コイ. 生き物文化誌・ビオストーリー, 3: 62-65.


2. 馬渕浩司. 2002. ベラ亜目の単系統性. 月刊海洋/号外, 29: 43-45.


1. 西田 睦・宮 正樹・白井 滋・斉藤憲治・熊澤慶伯・馬渕浩司. 2002. 脊椎動物の系統進化. 月刊海洋/号外, 29: 36-42.

 

報告書

8. 川口貴光・馬渕浩司・瀬能 . 2013. 明治神宮内の池で確認された魚類. 鎮座百年記念第二次明治神宮境内総合調査報告書, 228-237.

7. 西田 睦・宮 正樹・白井 滋・斉藤憲治・熊澤慶伯・馬渕浩司. 2005. 脊椎動物の系統進化. 海洋生命系のダイナミクス 平成 12年度~16年度科学研究費補助金 (学術創成研究費) 研究成果報告書, 179-180, 279-288.


6. 馬渕浩司. 2004. ベラ亜目魚類のミトコンドリアゲノムに見られる系統・分子進化. 海洋生命系のダイナミクス 平成 15 年度科学研究費補助金 (学術創成研究費:新プログラム) 研究成果報告書, 131-136.


5. 西田 睦・宮 正樹・白井 滋・斉藤憲治・熊澤慶伯・馬渕浩司. 2004. 脊椎動物の系統進化. 海洋生命系のダイナミクス 平成 15 年度科学研究費補助金 (学術創成研究費:新プログラム) 研究成果報告書, 121-130.


4. 馬渕浩司. 2003. ベラ亜目の単系統性. 海洋生命系のダイナミクス 平成 14 年度科学研究費補助金 (学術創成研究費:新プログラム) 研究成果報告書, 115-118.


3. 西田 睦・宮 正樹・白井 滋・斉藤憲治・熊澤慶伯・馬渕浩司. 2003. 脊椎動物の系統進化. 海洋生命系のダイナミクス 平成 14 年度科学研究費補助金 (学術創成研究費:新プログラム) 研究成果報告書, 107-114.


2. 馬渕浩司. 2002. ベラ亜目の単系統性. 海洋生命系のダイナミクス 平成 13 年度科学研究費補助金 (学術創成研究費:新プログラム) 研究成果報告書, 65-68.


1. 西田 睦・宮 正樹・白井 滋・斉藤憲治・熊澤慶伯・馬渕浩司. 2002. 脊椎動物の系統進化. 海洋生命系のダイナミクス 平成 13 年度科学研究費補助金 (学術創成研究費:新プログラム) 研究成果報告書, 57-64.



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